msvar
Table of Contents
MSVar
Version 0.4.1.b (7 April 1999)
This program is designed to help the user explore the most probable demographic and genealogical histories consistent with a sample of chromosomes typed at one or more loci. It relies on Markov Chain Monte Carlo (MCMC) simulation.
Program information
- Linux
- DOS
Data type handled
- Microsat
Input Files
- There should be no text, characters or extraneous numbers until after the last locus
- Lines have no significance - it is the sequence of numbers that is important
- 1. row: number of loci (it will only read this number - so you can have notes, other unused loci etc underneath
- 2. row: number of alleles (allelic classes) at locus
- 3. row: counts of chromosomes with the same length
- 4. row: length corresponding to counts above (has to be relative to something - I have zero here but could be any number; should be in same units - ie use number of repeats)
- 5. row: number of alles at next locus
- …
- anything you want down here
example
8 2 28 20 0 7 2 11 29 0 3 3 12 14 6 0 1 2 2 50 6 0 2 2 42 14 0 1 3 33 2 21 0 1 7 3 16 18 22 0 2 3 2 10 46 0 4 anything you want down here
How to cite
- Beaumont, M.A. (1999) Detecting Population expansion and decline using microsatellites. Genetics, 153, 2013-2029
msvar.txt · Last modified: 2008/07/22 13:31 by 127.0.0.1