lamarc
This is an old revision of the document!
Table of Contents
LAMARC
version 2.1.2b
Lamarc is a program for doing Likelihood Analysis with Metropolis Algorithm using Random Coalescence. Lamarc estimates effective population sizes, population exponential growth rates, a recombination rate, and past migration rates for one to n populations assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes.
Program information
- written in C++
- LINUX
- Mac OSX
- Windows
Data type handled
- DNA sequence
- RNA sequence
- SNP
- Microsatellites
- electrophoretic data
Input Files
LAMARC File Converter:
LAMARC XML file:
- surrounded by <lamarc> and </lamarc>
Data section:
contains the actual molecular data, and additional information used to interpret it
- enclosed in <data> tags
How to cite
Kuhner, M. K., 2006 “LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters.” Bioinformatics 22(6): 768-770.
lamarc.1197549278.txt.gz · Last modified: 2008/07/22 13:30 (external edit)