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hgdp-ceph

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HGDP-CEPH

http://www.cephb.fr/hgdp-cephdb/


The HGDP-CEPH Diversity Panel Database is designed to receive and store polymorphic marker genotypes generated by users of the DNAs of the HGDP-CEPH Diversity Panel. The data are accessible publically via a web interface (database V2.0 only) and/or as flat files (V2.0; Supplements 1 and 2). These panel DNAs presently are produced from 1064 lymphoblastoid cell lines (LCLs) representing some 1064 individuals sampled from 51 populations throughout the world. Each blood sample used for this resource was freely donated under conditions of informed consent.
In addition to genotypes, information in the DB include geographic and population origin and gender of each of the participating volunteers, who are identified by code numbers only (HGDP identifiers).


export formats

  • LINKAGE-like
  • to each of them a log file:
    #HGDP database V2.0 ; 2008/04/09 12:04:24
    #Dump format : Arlequin ; Filename : 20080409_120424_report.log
    #Selected populations : Karitiana, Surui, Colombians, Maya, Pima, Cambodians
    identifier	dbsnp_id	chrom	physical_pos	MAF_Europe	HetZ_Europe
    rs6696404	rs6696404	1	3015090	 0.0268	 0.0537
    rs760567	rs760567	1	3023622	 0.1946	 0.2819
    rs2993491	rs2993491	1	3034767	 0.2349	 0.2953
    rs2817172	rs2817172	1	3064676	 0.3926	 0.4631
hgdp-ceph.1216726267.txt.gz · Last modified: 2008/10/22 13:42 (external edit)