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--- structure [2007/12/11 09:48] – heidi
+++ structure [2011/07/07 12:54] (current) – heidi
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 ====== STRUCTURE ======
-{{structure.jpg?600}}
+{{structure.jpg?650}}
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-Version 2.2 (April 3, 2007)\\
+Version 2.3.3 (January 2010)\\
-The program structure implements a model-based clustering method for inferring population structure using genotype data consisting of unlinked markers. Its uses include inferring the presence of distinct populations, assigning individuals to populations, studying hybrid zones, identifying migrants and admixed individuals, and estimating population allele frequencies in situations where many individuals are migrants or admixed.
+The program structure implements a model-based clustering method for inferring population structure using genotype data consisting of unlinked markers. It includes inferring the presence of distinct populations, assigning individuals to populations, studying hybrid zones, identifying migrants and admixed individuals, and estimating population allele frequencies in situations where many individuals are migrants or admixed.
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   * Windows
   * Mac OS X
 ===== Data type handled =====
-  * SNP
+  * SNP (numeric)
   * Microsatellites
   * RFLP
@@ Line 85: / Line 86: @@
 Carsten  2   110    145     64     1     92
 </code>
 ===== How to cite =====
 The basic algorithm :\\
-Pritchard, J. K., Stephens, M., and Donnelly, P. (2000a). Inference of population structure using
+  * Pritchard, J. K., Stephens, M., and Donnelly, P. (2000a). Inference of population structure using multilocus genotype data. Genetics, 155:945-959.
-multilocus genotype data. Genetics, 155:945{959.
 \\
 Extensions to the method:\\
-Falush, D., Stephens, M., and Pritchard, J. K. (2003a). Inference of population structure: Exten-
+  * Falush, D., Stephens, M., and Pritchard, J. K. (2003a). Inference of population structure: Extensions to linked loci and correlated allele frequencies. Genetics, 164:1567-1587.
-sions to linked loci and correlated allele frequencies. Genetics, 164:1567{1587.\\
+  * Falush, D., Stephens, M., and Pritchard, J. K. (2007). Inference of population structure using multilocus genotype data: dominant markers and null alleles. Molecular Ecology Notes.
-and\\
+  * Hubisz M. J., et al. (2009). Inferring weak population structure with the assistance of sample group information. Molecular Ecology Resources, 9:1322-32.
-Falush, D., Stephens, M., and Pritchard, J. K. (2007). Inference of population structure using
-multilocus genotype data: dominant markers and null alleles. Molecular Ecology Notes.