Differences

This shows you the differences between two versions of the page.

--- newhybrids [2011/06/03 16:54] – heidi
+++ newhybrids [2011/06/03 17:20] (current) – heidi
@@ Line 17: / Line 17: @@
   * Windows
 \\
 ===== Data type handled =====
+  * diploid
   * AFLP
   * MICROSAT
+  * Standard
 \\
@@ Line 33: / Line 38: @@
 ===== Input Files =====
-  * whitespace (spaces and or tabs) separated text file *.txt
+  * whitespace (spaces and or tabs) separated text file *.txt/*.dat
   * first line: ''NumIndivs '' number of individuals
   * second line: ''NumLoci '' number of loci
@@ Line 47: / Line 52: @@
 \\
 ==== AFLP data ====
   * ''Lumped'' format
@@ Line 55: / Line 61: @@
   * data types can be mixed
+\\
+==== Example ====
+  * ''Lumped'' data file:
+<code>
+NumIndivs 2
+NumLoci 6
+Digits 1
+Format Lumped
+LocusNames sAAT1 sAAT2 sAAT3 ADA1 ADA2 ADH
+11 11 11 0 11 32
+21 11 21 11 11 12
+</code>
+  * ''NonLumped'' data file:
+<code>
+NumIndivs 2
+NumLoci 6
+Digits 1
+Format NonLumped
+LocusNames sAAT1 sAAT2 sAAT3 ADA1 ADA2 ADH
+123 143 -1 -1 144 144 120 122 157 158 144 144
+135 135 134 140 144 144 120 122 161 161 144 144
+</code>
+  * AFLP data file (4 Microsat loci, 5 AFLP loci):
+<code>
+NumIndivs 2
+NumLoci 9
+Digits 1
+Format Lumped
+LocusNames m1 m2 m3 m4 A1 A2 A3 A4 A5
+11 12 13 11 + + + - +
+22 33 11 22 - - 0 - -
+12 13 13 11 + - - - +
+</code>
 ===== How to cite =====