fstat
Differences
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| Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
| fstat [2007/12/12 13:30] – heidi | fstat [2010/04/27 15:40] (current) – heidi | ||
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| * Windows (95 and above) | * Windows (95 and above) | ||
| * Macintosh with PC emulation software | * Macintosh with PC emulation software | ||
| + | |||
| ===== Data type handled ===== | ===== Data type handled ===== | ||
| * Microsatellites | * Microsatellites | ||
| - | * multi-allelic markers | + | * Standard (multi-allelic markers) |
| + | |||
| + | |||
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| Line 25: | Line 31: | ||
| ===== Input Files ===== | ===== Input Files ===== | ||
| + | input file of format [[GENEPOP]] can be translated to a FSTAT input file in the file conversion menu | ||
| + | |||
| + | === FSTAT format: === | ||
| * named FILENAME.DAT | * named FILENAME.DAT | ||
| * total number of individuals in the data set needs to be less than 20’000 | * total number of individuals in the data set needs to be less than 20’000 | ||
| Line 84: | Line 93: | ||
| \\ | \\ | ||
| - | **additional label file:** text file containing names (labels) for the population samples: | + | === additional label file: === |
| + | text file containing names (labels) for the population samples: | ||
| * extension: .LAB | * extension: .LAB | ||
| * Each line should contain the name (label) of one sample | * Each line should contain the name (label) of one sample | ||
| Line 95: | Line 105: | ||
| </ | </ | ||
| - | \\ | + | === multiple regression and partial mantel file: === |
| - | * input file of format [[GENEPOP]] or [[FSTAT]] can be translated to a FSTAT input file in the file conversion menu | + | No specific extension is required for this file |
| + | * example: < | ||
| + | | ||
| + | var0 (YANOM.GEN) | ||
| + | var1 (YANOM.ANT) | ||
| + | var2 (YANOM.GEO) | ||
| + | 35.00000 96.00000 9.00000 | ||
| + | 44.00000 147.00000 28.00000 | ||
| + | 38.00000 88.00000 20.00000 | ||
| + | 47.00000 295.00000 152.00000 | ||
| + | 56.00000 318.00000 161.00000 | ||
| + | 59.00000 309.00000 178.00000 | ||
| + | 52.00000 284.00000 149.00000 | ||
| + | 65.00000 339.00000 158.00000 | ||
| + | </ | ||
| - | \\ | ||
| ===== How to cite ===== | ===== How to cite ===== | ||
| - | Goudet, J. 2001. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3) | + | Goudet, J. 2001. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available from http:// |
fstat.1197462616.txt.gz · Last modified: 2008/07/22 13:30 (external edit)