fstat
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| fstat [2007/12/12 13:27] – heidi | fstat [2010/04/27 15:40] (current) – heidi | ||
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| * Windows (95 and above) | * Windows (95 and above) | ||
| * Macintosh with PC emulation software | * Macintosh with PC emulation software | ||
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| ===== Data type handled ===== | ===== Data type handled ===== | ||
| * Microsatellites | * Microsatellites | ||
| - | * multi-allelic markers | + | * Standard (multi-allelic markers) |
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| ===== Input Files ===== | ===== Input Files ===== | ||
| + | input file of format [[GENEPOP]] can be translated to a FSTAT input file in the file conversion menu | ||
| + | |||
| + | === FSTAT format: === | ||
| * named FILENAME.DAT | * named FILENAME.DAT | ||
| * total number of individuals in the data set needs to be less than 20’000 | * total number of individuals in the data set needs to be less than 20’000 | ||
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| 3 0404 0404 0403 0201 0404 | 3 0404 0404 0403 0201 0404 | ||
| </ | </ | ||
| - | * **additional label file:** text file containing names (labels) for the population samples: | + | |
| - | * extension: .LAB | + | \\ |
| - | * Each line should contain the name (label) of one sample | + | === additional label file: === |
| - | * samples should appear in the same order as in the .DAT file | + | text file containing names (labels) for the population samples: |
| - | * labels can be any length but will be truncated to six characters in the output files | + | * extension: .LAB |
| - | **example:** | + | * Each line should contain the name (label) of one sample |
| - | < | + | * samples should appear in the same order as in the .DAT file |
| + | * labels can be any length but will be truncated to six characters in the output files | ||
| + | * example: < | ||
| Stade de France | Stade de France | ||
| Twickenham | Twickenham | ||
| Line 92: | Line 105: | ||
| </ | </ | ||
| - | \\ | + | === multiple regression and partial mantel file: === |
| - | * input file of format [[GENEPOP]] or [[FSTAT]] can be translated to a FSTAT input file in the file conversion menu | + | No specific extension is required for this file |
| + | * example: < | ||
| + | | ||
| + | var0 (YANOM.GEN) | ||
| + | var1 (YANOM.ANT) | ||
| + | var2 (YANOM.GEO) | ||
| + | 35.00000 96.00000 9.00000 | ||
| + | 44.00000 147.00000 28.00000 | ||
| + | 38.00000 88.00000 20.00000 | ||
| + | 47.00000 295.00000 152.00000 | ||
| + | 56.00000 318.00000 161.00000 | ||
| + | 59.00000 309.00000 178.00000 | ||
| + | 52.00000 284.00000 149.00000 | ||
| + | 65.00000 339.00000 158.00000 | ||
| + | </ | ||
| - | \\ | ||
| ===== How to cite ===== | ===== How to cite ===== | ||
| - | Goudet, J. 2001. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3) | + | Goudet, J. 2001. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available from http:// |
fstat.1197462458.txt.gz · Last modified: 2008/07/22 13:30 (external edit)