Differences

This shows you the differences between two versions of the page.

--- dnasp [2007/12/12 11:00] – heidi
+++ dnasp [2008/08/14 11:28] (current) – heidi
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 ====== DnaSP ======
-{{dnasplogo1.gif|}}{{dnasplogo.gif}}
+{{dnasplogo1.gif}}{{dnasplogo.gif}}
 \\
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   * DNA
   * SNP
 ===== Input Files =====
 read or write (export) five types of file formats:
-  * MEGA (Kumar et al. 1994)
+  * [[MEGA]] (Kumar et al. 1994)
   * NBRF/PIR (Sidman et al. 1988)
   * [[NEXUS]]
-  * FASTA
+  * [[FASTA]]
   * [[PHYLIP]]
   * [[Arlequin]] (only write)
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 \\
 In all cases one or more homologous aligned nucleotide (DNA or RNA) sequences should be included in a text file. The total number of sequences and the sequence length that can be handled by DnaSP mainly depend on the available memory, which can analyze data files with a large number (thousands) of sequences of thousands of nucleotides each.\\
 ===== How to cite =====
+  * Rozas, J. and Rozas, R. 1995. DnaSP, DNA sequence polymorphism: an interactive program for estimating Population Genetics parameters from DNA sequence data. Comput. Applic. Biosci. 11: 621-625.
+  * Rozas, J. and Rozas, R. 1997. DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis. Comput. Applic. Biosci. 13: 307-311.
+  * Rozas, J. and Rozas, R. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
+  * Rozas, J., Sánchez-DelBarrio, J. C., Messeguer, X. and Rozas, R. (2003).  DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.