Differences

This shows you the differences between two versions of the page.

--- arlequin [2007/12/07 11:44] – heidi
+++ arlequin [2011/07/07 11:16] (current) – heidi
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-**[[http://cmpg.unibe.ch/software/arlequin3/|Arlequin]]**\\
+**[[http://popgen.unibe.ch/software/arlequin35/|Arlequin]]**\\
-[[http://cmpg.unibe.ch/software/arlequin3/arlequin31.pdf|manual]]
+[[http://popgen.unibe.ch/software/arlequin35/man/Arlequin35.pdf|manual]]
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-Arlequin ver 3.11 (released 19 February 2007)\\
+Arlequin ver 3.5 (released 24 February 2010)\\
 The goal of Arlequin is to provide the average user in population genetics with quite a large set of basic methods and statistical tests, in order to extract information on genetic and demographic features of a collection of population samples.\\
 The analyses Arlequin can perform on the data fall into two main categories: intra-population and inter-population methods.\\
 Computes indices of genetic diversity, F-statistics and genetic distances between populations; exact test of HWE, LD and population differentiation; tests selective neutrality within populations; Mantel test; estimates gametic phase from multilocus genotypes; estimated demographic parameters form mismatch distribution
 ===== Program information =====
   * program written in C++
-  * Windows version (2000, XP, and above)
+  * Windows version (XP, Vista, 7)
+  * LINUX
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 ===== Input Files =====
-Contain the description of the properties of the data, as well as the raw data themselves.
+Contain the description of the properties of the data, as well as the raw data themselves. The input files should have a "*.arp" extension (for ARlequin Project).
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 ==== example: ====
 The following small example is a project file containing four populations. The data type is STANDARD genotypic data with unknown gametic phase:
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 }
 </code>
 ===== How to cite =====
-Excoffier, L. G. Laval, and S. Schneider (2005) Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1:47-50.
+Excoffier, L. and H.E. L. Lischer (2010) Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources. 10: 564-567.