r-lequin
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r-lequin [2008/03/05 11:11] – heidi | r-lequin [2009/01/17 10:55] (current) – heidi | ||
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====== R-lequin ====== | ====== R-lequin ====== | ||
- | {{matrix_pairwise_fst.png?220}} {{matrix_hapdistance_between-within_pop_and_groups.png? | + | {{pairwisediffmatrix_03-10-08_at_14-09-16.png? |
- | + | \\ | |
- | **R-lequin is an R interface | + | \\ |
+ | **R-lequin is a collection of R functions to parse a XML output file of ARLEQUIN version 3.12. R-lequin extracts data and produces graphics. R is an ideal programming language | ||
+ | R-lequin is a tool to enhance the user friendliness and the readability of the ARLEQUIN output. | ||
+ | ** | ||
\\ | \\ | ||
+ | ===== R code for graphics ===== | ||
+ | === Documentations: | ||
+ | {{master_r-lequin.pdf|}}\\ | ||
+ | {{r-lequin_graphic_description.pdf|}} | ||
- | ===== R code for graphics ===== | ||
- | * Documentations: | ||
- | * {master_r-lequin.pdf|}} | ||
- | * {{r-lequin_graphic_description.pdf|}} | ||
\\ | \\ | ||
* **[[general commands]]** | * **[[general commands]]** | ||
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+ | |||
===== Arlequin output file changes (HTML to XML) ===== | ===== Arlequin output file changes (HTML to XML) ===== | ||
=== Delete: === | === Delete: === | ||
* < | * < | ||
- | * the space (& | + | * the space (& |
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* specific tags around data which is needed to make graphics in R: | * specific tags around data which is needed to make graphics in R: | ||
* unique names for a special kind of data (the format of the data within this tag must always be the same) | * unique names for a special kind of data (the format of the data within this tag must always be the same) | ||
+ | |||
+ | \\ | ||
+ | * no sample names/ | ||
\\ | \\ |
r-lequin.1204711887.txt.gz · Last modified: 2008/07/22 13:30 (external edit)