r-lequin
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r-lequin [2008/01/29 14:33] – heidi | r-lequin [2009/01/17 10:55] (current) – heidi | ||
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====== R-lequin ====== | ====== R-lequin ====== | ||
- | {{matrix_pairwise_fst.png?220}} {{matrix_hapdistance_between-within_pop_and_groups.png? | + | {{pairwisediffmatrix_03-10-08_at_14-09-16.png? |
- | + | \\ | |
- | **R-lequin is an R interface for the graphical display of Arlequin outputs. It should add value and help interpreting results from large Arlequin analyses.** | + | |
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+ | **R-lequin is a collection of R functions to parse a XML output file of ARLEQUIN version 3.12. R-lequin extracts data and produces graphics. R is an ideal programming language for parsing XML files and for graphic creation because it provides a lot of graphical | ||
+ | R-lequin is a tool to enhance the user friendliness and the readability of the ARLEQUIN output. | ||
+ | ** | ||
+ | \\ | ||
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===== R code for graphics ===== | ===== R code for graphics ===== | ||
- | * {{master_r-lequin.doc}} | + | === Documentations: |
+ | {{master_r-lequin.pdf|}}\\ | ||
+ | {{r-lequin_graphic_description.pdf|}} | ||
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===== Arlequin output file changes (HTML to XML) ===== | ===== Arlequin output file changes (HTML to XML) ===== | ||
=== Delete: === | === Delete: === | ||
* < | * < | ||
- | * the space (& | + | * the space (& |
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* specific tags around data which is needed to make graphics in R: | * specific tags around data which is needed to make graphics in R: | ||
* unique names for a special kind of data (the format of the data within this tag must always be the same) | * unique names for a special kind of data (the format of the data within this tag must always be the same) | ||
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+ | \\ | ||
+ | * no sample names/ | ||
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===== tutorials ===== | ===== tutorials ===== | ||
* {{r_tutorial.pdf|small introduction to R}} | * {{r_tutorial.pdf|small introduction to R}} | ||
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* [[http:// | * [[http:// | ||
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- | * [[xml_presentation|xml presentation]] | + | * [[xml_presentation|XML]] |
r-lequin.1201613634.txt.gz · Last modified: 2008/07/22 13:30 (external edit)