Differences

This shows you the differences between two versions of the page.

--- powermarker [2007/12/10 10:13] – heidi
+++ powermarker [2008/07/22 13:31] (current) – external edit 127.0.0.1
@@ Line 61: / Line 61: @@
 Sample2   -        2.0      1/1       14/14     A/A
 </code>
 ==== frequency data: ====
@@ Line 79: / Line 80: @@
 Marker2   B2       0.9    0.5    0.6
 </code>
+==== distance data: ====
+Distance in PowerMarker needs to be imported if you want to construct NJ/UPGMA tree from your own distance.
+  * same format as in [[PHYLIP]]
+  * distance matrix should be symmetric and zero-diagonal
+\\
+**example** (from PHYLIP):
+<code>
+Alpha    0.0000 1.0000 2.0000 3.0000 3.0000
+Beta     1.0000 0.0000 2.0000 3.0000 3.0000
+Gamma    2.0000 2.0000 0.0000 3.0000 3.0000
+Delta    3.0000 3.0000 3.0000 0.0000 1.0000
+Epsilon  3.0000 3.0000 3.0000 1.0000 0.0000
+</code>
+==== tree data: ====
+Tree in PowerMarker can be imported from [[PHYLIP]] format text files
+==== table data: ====
+No specific format is required for the table except that it must be a valid table which means each row in the table has the same number of columns. Heading row can be provided or generated. The first column (column of row names) can also be generated if not provided. The easiest way to import a table from Excel is to select the table in Excel and copy the selected table to the clipboard and import Table in PowerMarker from the clipboard.
+===== Export dataset =====
+Dataset can be exported to a text file in five different formats:
+  * raw format
+  * table format
+  * [[STRUCTURE]] format
+  * [[NEXUS]] format
+  * [[Arlequin]] format
 ===== How to cite =====
 Citation information can be obtained by selecting Help | How To Cite PowerMarker in the PowerMarker program.