PHYLIP

Version 3.67 (July, 2007) PHYLIP, the Phylogeny Inference Package, is a package of programs for inferring phylogenies (evolutionary trees). It can infer phylogenies by parsimony, compatibility, distance matrix methods, and likelihood. It can also compute consensus trees, compute distances between trees, draw trees, resample data sets by bootstrapping or jackknifing, edit trees, and compute distance matrices.

• written in C
• Windows
• Mac OS X
• Mac OS 9
• UNIX
• LINUX

• nucleotide sequences
• protein sequences
• gene frequencies
• restriction sites
• restriction fragments
• distances
• discrete characters
• continuous characters