pgdspider
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pgdspider [2013/09/19 14:50] – heidi | pgdspider [2016/02/22 15:39] (current) – heidi | ||
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====== PGDSpider ====== | ====== PGDSpider ====== | ||
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- | **PGDSpider version 2.0.1.6 (May 2012)** | + | **PGDSpider version 2.0.6.0 (Juli 2014)** |
PGDSpider is a powerful automated data conversion tool for population genetic and genomics programs. It facilitates the data exchange possibilities between programs for a vast range of data types (e.g. DNA, RNA, NGS, microsatellite, | PGDSpider is a powerful automated data conversion tool for population genetic and genomics programs. It facilitates the data exchange possibilities between programs for a vast range of data types (e.g. DNA, RNA, NGS, microsatellite, | ||
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===== download PGDSpider ===== | ===== download PGDSpider ===== | ||
- | **[[http://www.cmpg.unibe.ch/ | + | **[[http://cmpgapache.unibe.ch/cmpg-software/ |
[[PGD Spider - manual|PGDSpider - manual]] | [[PGD Spider - manual|PGDSpider - manual]] | ||
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**System requirements: | **System requirements: | ||
PGDSpider is written in Java and therefore platform independent, | PGDSpider is written in Java and therefore platform independent, | ||
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- | Copyright © 2007-2012, Heidi E.L. Lischer. All rights reserved.\\ | + | Copyright © 2007-2014, Heidi E.L. Lischer. All rights reserved.\\ |
PGDSpider is distributed under the BSD 3-Clause License. For the full text of the license, see the file LICENSE.txt\\ | PGDSpider is distributed under the BSD 3-Clause License. For the full text of the license, see the file LICENSE.txt\\ | ||
By using, modifying or distributing this software you agree to be bound by the terms of this license. | By using, modifying or distributing this software you agree to be bound by the terms of this license. | ||
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- | ===== Input (read) formats ===== | ||
- | * [[PGD]]: //Version 1.0// | ||
- | * [[Arlequin]]: | ||
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- | sion 3.5 (24. February 2010)// | + | ===== Input (read) formats ===== |
+ | * [[PGD]]: //Version 1.1// | ||
+ | * [[Arlequin]]: | ||
* [[http:// | * [[http:// | ||
* [[BAPS]]: //Version 5.4 (29. April 2010)// | * [[BAPS]]: //Version 5.4 (29. April 2010)// | ||
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* [[http:// | * [[http:// | ||
* [[CONVERT]]: | * [[CONVERT]]: | ||
+ | * [[Eigensoft]] (EIGENSTRAT, | ||
* [[FASTA]]: but only these types: | * [[FASTA]]: but only these types: | ||
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* [[GENEPOP]]: | * [[GENEPOP]]: | ||
* [[GENETIX]]: | * [[GENETIX]]: | ||
+ | * [[HGDP]]: // | ||
* [[HGDP-CEPH]] (Arlequin + log file): //Version 3.0// | * [[HGDP-CEPH]] (Arlequin + log file): //Version 3.0// | ||
* [[Immanc]] (BayesAss): //Version 5.0 (8. October 1998)// | * [[Immanc]] (BayesAss): //Version 5.0 (8. October 1998)// | ||
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* [[MSA]]: //Version 4.05// | * [[MSA]]: //Version 4.05// | ||
* [[NewHybrids]]: | * [[NewHybrids]]: | ||
- | * [[NEXUS]] | + | * [[NEXUS]] |
+ | * [[ONeSAMP]]: | ||
* [[PED]] | * [[PED]] | ||
* [[PHYLIP]] (DNA/ RNA /distance matrix): //Version 3.69 (September 2009)// | * [[PHYLIP]] (DNA/ RNA /distance matrix): //Version 3.69 (September 2009)// | ||
* [[http:// | * [[http:// | ||
* [[STRUCTURE]]: | * [[STRUCTURE]]: | ||
- | * [[http:// | + | * [[http:// |
- | + | ||
- | \\ | + | |
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* [[Arlequin]]: | * [[Arlequin]]: | ||
* [[http:// | * [[http:// | ||
+ | * [[BAMOVA]]: //Version 1.02 (27.9.2911)// | ||
* [[BAPS]]: //Version 5.4 (29. April 2010)// | * [[BAPS]]: //Version 5.4 (29. April 2010)// | ||
* [[BATWING]]: | * [[BATWING]]: | ||
* [[http:// | * [[http:// | ||
+ | * [[Eigensoft]] (EIGENSTRAT, | ||
* [[FASTA]] | * [[FASTA]] | ||
* [[FASTQ]] | * [[FASTQ]] | ||
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* [[MSVar]]: //Version 0.4.1.b (7. April 1999)// | * [[MSVar]]: //Version 0.4.1.b (7. April 1999)// | ||
* [[NewHybrids]]: | * [[NewHybrids]]: | ||
- | * [[NEXUS]] | + | * [[NEXUS]] |
+ | * [[ONeSAMP]]: | ||
* [[PED]] | * [[PED]] | ||
* [[PHYLIP]] (DNA/ RNA /distance matrix): //Version 3.69 (September 2009)// | * [[PHYLIP]] (DNA/ RNA /distance matrix): //Version 3.69 (September 2009)// | ||
* [[http:// | * [[http:// | ||
+ | * [[Structurama]] | ||
* [[STRUCTURE]]: | * [[STRUCTURE]]: | ||
* [[http:// | * [[http:// |
pgdspider.1379595058.txt.gz · Last modified: 2013/09/19 14:50 by heidi