ped
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ped [2011/06/07 17:28] – heidi | ped [2011/06/08 09:42] (current) – heidi | ||
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* Unix | * Unix | ||
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===== Data type handled ===== | ===== Data type handled ===== | ||
* diploid | * diploid | ||
- | * AFLP | + | * SNP |
- | * MICROSAT | + | |
- | * Standard | + | |
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If specially specified following columns can be missing: | If specially specified following columns can be missing: | ||
* '' | * '' | ||
- | | + | |
- | * '' | + | * '' |
- | * '' | + | * '' |
- | * '' | + | * '' |
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- | ===== MAP files ===== | + | |
+ | |||
+ | |||
+ | ==== MAP files ==== | ||
* Each line of the MAP file describes a single marker and must contain exactly 4 columns: | * Each line of the MAP file describes a single marker and must contain exactly 4 columns: | ||
- | * chromosome (1-22, X, Y or 0 if unplaced) | + | * chromosome (1-22, X, Y, MT or 0 if unplaced) |
* rs# or snp identifier | * rs# or snp identifier | ||
* Genetic distance (morgans) (missing: 0) | * Genetic distance (morgans) (missing: 0) | ||
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* The markers in the PED file do not need to be in genomic order: (i.e. the order MAP file should align with the order of the PED file markers). | * The markers in the PED file do not need to be in genomic order: (i.e. the order MAP file should align with the order of the PED file markers). | ||
+ | \\ | ||
ped.1307460533.txt.gz · Last modified: 2011/06/07 17:28 by heidi