nexus
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nexus [2008/01/16 15:34] – heidi | nexus [2008/07/22 13:31] (current) – external edit 127.0.0.1 | ||
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===== format information ===== | ===== format information ===== | ||
standard text file | standard text file | ||
+ | |||
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;] | ;] | ||
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+ | END; | ||
+ | </ | ||
+ | BEGIN CHARACTERS; | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | taxon_1 absent red big | ||
+ | taxon_2 absent blue small | ||
+ | taxon_3 present blue small; | ||
END; | END; | ||
</ | </ | ||
- | * UNALIGNED: similar to a CHARACTRS block, but it contains unaligned molecular sequence data. < | + | |
BEGIN UNALIGNED; | BEGIN UNALIGNED; | ||
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</ | </ | ||
- | * DISTANCES: contains distance matrices < | + | |
BEGIN DISTANCES; | BEGIN DISTANCES; | ||
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</ | </ | ||
- | * DATA: is a CHARACTERS block that includes not only the definition of characters but also the definition of taxa (this block is not recommended) < | + | |
BEGIN DATA; | BEGIN DATA; | ||
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</ | </ | ||
- | * SETS: descriptions of collections of objects. These objects include characters, taxa, trees, states, and kinds of changes. In addition, partitions of characters, taxa, and trees can be formed. < | + | |
BEGIN SETS; | BEGIN SETS; | ||
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</ | </ | ||
- | * ASSUMPTIONS: | + | |
BEGIN ASSUMPTIONS; | BEGIN ASSUMPTIONS; | ||
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</ | </ | ||
- | * CODONS: contains information about the genetic code, the regions of DNA and RNA sequences that are protein coding, and the location of triplets coding for amino acids in nucleotide sequences. < | + | |
BEGIN CODONS; | BEGIN CODONS; | ||
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</ | </ | ||
- | * NOTES: allows attachment of additional information (text, pictures, etc.) to various objects (trees, taxa, characters, etc.) in the file. < | + | |
BEGIN NOTES; | BEGIN NOTES; | ||
[TEXT [TAXON=taxon-set] [CARACTER=character-set] [STATE=state-set] [TREE=tree-set] | [TEXT [TAXON=taxon-set] [CARACTER=character-set] [STATE=state-set] [TREE=tree-set] |
nexus.1200494073.txt.gz · Last modified: 2008/07/22 13:30 (external edit)