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newhybrids [2011/06/03 16:58] – heidinewhybrids [2011/06/03 17:20] (current) – heidi
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   * Windows   * Windows
 \\ \\
 +
 +
  
  
  
 ===== Data type handled ===== ===== Data type handled =====
 +  * diploid
   * AFLP   * AFLP
   * MICROSAT   * MICROSAT
 +  * Standard
  
 \\ \\
 +
  
  
Line 33: Line 38:
  
 ===== Input Files ===== ===== Input Files =====
-  * whitespace (spaces and or tabs) separated text file *.txt+  * whitespace (spaces and or tabs) separated text file *.txt/*.dat
   * first line: ''NumIndivs '' number of individuals   * first line: ''NumIndivs '' number of individuals
   * second line: ''NumLoci '' number of loci   * second line: ''NumLoci '' number of loci
Line 57: Line 62:
  
 \\ \\
 +
 +
 ==== Example ==== ==== Example ====
   * ''Lumped'' data file:   * ''Lumped'' data file:
Line 70: Line 77:
   * ''NonLumped'' data file:   * ''NonLumped'' data file:
 <code> <code>
-NumIndivs 1+NumIndivs 2
 NumLoci 6 NumLoci 6
 Digits 1 Digits 1
-Format Lumped+Format NonLumped
 LocusNames sAAT1 sAAT2 sAAT3 ADA1 ADA2 ADH LocusNames sAAT1 sAAT2 sAAT3 ADA1 ADA2 ADH
 1 123 143 -1 -1 144 144 120 122 157 158 144 144  1 123 143 -1 -1 144 144 120 122 157 158 144 144 
 2 135 135 134 140 144 144 120 122 161 161 144 144  2 135 135 134 140 144 144 120 122 161 161 144 144 
 +</code>
 +  * AFLP data file (4 Microsat loci, 5 AFLP loci):
 +<code>
 +NumIndivs 2
 +NumLoci 9
 +Digits 1
 +Format Lumped
 +LocusNames m1 m2 m3 m4 A1 A2 A3 A4 A5
 +1 11 12 13 11 + + + - +
 +2 22 33 11 22 - - 0 - -
 +3 12 13 13 11 + - - - +
 </code> </code>
  
newhybrids.1307113101.txt.gz · Last modified: 2011/06/03 16:58 by heidi