Masterarbeit, Heidi Lischer

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msa [2008/06/17 14:43] – heidimsa [2008/07/30 12:07] (current) – heidi
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     * For compatibility with PHYLIP the population labels are limited to 8 characters     * For compatibility with PHYLIP the population labels are limited to 8 characters
     * For individual based distances, only the first 4 characters of the population label are used to label individuals. Therefore, it is highly advised that the first 4 characters differ among population labels.     * For individual based distances, only the first 4 characters of the population label are used to label individuals. Therefore, it is highly advised that the first 4 characters differ among population labels.
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 ==== example ==== ==== example ====
 <code> <code>
-2 2 2 2 2 3                 113 81 112 159 116 +2 2 2 2 2 3 
- 1770 X13444 1818 X65444 1774 X66788 1772 X65644 1792 + 113 81 112 159 116 
-Pop1 d 1 140 140 147 159 152+ 1770 X13444 1818 X65444 1774 X66788 1772 X65644 1792 X976545 
 +Pop1 d 1 140 140 147 159 152 155
 Pop1 d 1 134 134 147 151 184 186  Pop1 d 1 134 134 147 151 184 186
-Pop1 d 1 134 134 104 106 147 147 186 178 152  +Pop1 d 1 134 134 104 106 147 147 186 178 152 155 
-Pop2 d 1 134 136 104 100 159 153 186 172 152  +Pop2 d 1 134 136 104 100 159 153 186 172 152 155 
-Pop2 d 1 134 140 104 104 151 143 184 178 152  +Pop2 d 1 134 140 104 104 151 143 184 178 152 155 
-Pop2 d 1 134 134 104 104 147 151 186 188 152  +Pop2 d 1 134 134 104 104 147 151 186 188 152 152 
-Pop2 d 1 134 134 147 141 184 178 152 +Pop2 d 1 134 134 147 141 184 178 152 152
 Pop3 h 2 104 104  Pop3 h 2 104 104
-Pop3 h 2 134 134 104 104 149 149 186 178 152  +Pop3 h 2 134 134 104 104 149 149 186 178 152 152 
-Pop3 d 2 134 134 147 147 184 186 152+Pop3 d 2 134 134 147 147 184 186 152 155
 Pop3 h 2 104 98  Pop3 h 2 104 98
-Pop3 d 2 104 106 186 178 155+Pop3 d 2 104 106 186 178 155 155
 </code> </code>
  
 ===== How to cite ===== ===== How to cite =====
   * Dieringer, Daniel & Schlštterer, Christian (2003) Microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets. Molecular Ecology Notes 3 (1), 167-169   * Dieringer, Daniel & Schlštterer, Christian (2003) Microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets. Molecular Ecology Notes 3 (1), 167-169
msa.1213706606.txt.gz · Last modified: 2008/07/22 13:30 (external edit)