Differences

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--- hickory [2007/12/13 11:09] – heidi
+++ hickory [2008/07/22 13:31] (current) – external edit 127.0.0.1
@@ Line 1: / Line 1: @@
 ====== HICKORY ======
-**[[http://darwin.eeb.uconn.edu/hickory/hickory.html|HICKORY]]**
+{{hickory2.png?400}}\\
+**[[http://darwin.eeb.uconn.edu/hickory/hickory.html|HICKORY]]**\\
+[[http://darwin.eeb.uconn.edu/hickory/documentation/Hickory.pdf|documentation]]
 \\
@@ Line 9: / Line 11: @@
   * Windows
   * Linux
 ===== Data type handled =====
   * dominant markers
   * co-dominant markers
+  * AFLP (amplified fragment length polymorphism)
+  * RAPD (random amplified polymorphic DNA)
+  * multi-allelic markers
@@ Line 58: / Line 65: @@
         * dominant phenotype is scored as ''1'' (or ''+'') or ''0'' (''−'') (default)
         * Hickory accepts the following alternatives: <code>
-dominant;                     -> default
+dominant;                 -> default
-dominant all:1;               -> default
+dominant all:1;           -> default
-dominant all:0;               -> dominant phenotype at all loci scored as 0 (recessive = 1)
+dominant all:0;           -> dominant phenotype at all loci scored as 0 (recessive = 1)
-dominant 1,2,3:1 4,5:0;       -> dominant phenotype at first three loci scored as 1 and at last two loci scored as 0
+dominant 1,2,3:1 4,5:0;   -> dominant phenotype at first 3 loci scored as 1 and at last 2 loci scored as 0
-dominant 1-3:1 4-5:0;         -> dominant phenotype at first three loci scored as 1 and at last two loci scored as 0
+dominant 1-3:1 4-5:0;     -> dominant phenotype at first 3 loci scored as 1 and at last 2 loci scored as 0
 </code>