hickory
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hickory [2007/12/13 11:07] – heidi | hickory [2008/07/22 13:31] (current) – external edit 127.0.0.1 | ||
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====== HICKORY ====== | ====== HICKORY ====== | ||
- | **[[http:// | + | {{hickory2.png? |
+ | **[[http:// | ||
+ | [[http:// | ||
\\ | \\ | ||
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* Windows | * Windows | ||
* Linux | * Linux | ||
+ | |||
===== Data type handled ===== | ===== Data type handled ===== | ||
* dominant markers | * dominant markers | ||
* co-dominant markers | * co-dominant markers | ||
+ | * AFLP (amplified fragment length polymorphism) | ||
+ | * RAPD (random amplified polymorphic DNA) | ||
+ | * multi-allelic markers | ||
+ | |||
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* dominant phenotype is scored as '' | * dominant phenotype is scored as '' | ||
* Hickory accepts the following alternatives: | * Hickory accepts the following alternatives: | ||
- | dominant; | + | dominant; |
- | dominant all: | + | dominant all: |
- | dominant all: | + | dominant all: |
- | dominant 1,2,3:1 4, | + | dominant 1,2,3:1 4, |
- | dominant 1-3:1 4-5: | + | dominant 1-3:1 4-5: |
</ | </ | ||
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* the **hickory block** is optional: | * the **hickory block** is optional: | ||
* you can set parameters governing the MCMC sampler | * you can set parameters governing the MCMC sampler | ||
+ | |||
===== How to cite ===== | ===== How to cite ===== | ||
+ | * Holsinger, K. E. 1999. Analysis of genetic diversity in geographically structured populations: | ||
+ | * Holsinger, K. E., P. O. Lewis, and D. K. Dey. 2002. A Bayesian approach to inferring population structure from dominant markers. Molecular Ecology 11: | ||
+ | * Holsinger, K. E., and L. E. Wallace. 2004. Bayesian approaches for the analysis of population structure: an example from Platanthera leucophaea (Orchidaceae). Molecular Ecology 13:887-894. | ||
+ | * Song, S., D. K. Dey, and K. E. Holsinger. 2006. Differentiation among populations with migration, mutation, and drift: implications for genetic inference. Evolution 60:1-12. |
hickory.1197540445.txt.gz · Last modified: 2008/07/22 13:30 (external edit)