Masterarbeit, Heidi Lischer

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====== HGDP-CEPH ======
[[http://www.cephb.fr/hgdp-cephdb/]]

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The HGDP-CEPH Diversity Panel Database is designed to receive and store polymorphic marker genotypes generated by users of the DNAs of the HGDP-CEPH Diversity Panel. The data are accessible publically via a web interface (database V3.0 only) and/or as flat files (V3.0; Supplements 1 and 2). These panel DNAs presently are produced from 1064 lymphoblastoid cell lines (LCLs) representing some 1064 individuals sampled from 51 populations throughout the world. Each blood sample used for this resource was freely donated under conditions of informed consent.\\
In addition to **genotypes**, information in the DB include **geographic and population origin** and gender of each of the participating volunteers, who are identified by code numbers only (HGDP identifiers). 

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The HGDP-CEPH Human Genome Diversity Cell Line Panel is a widely-used resource for studies of human genetic variation. The HGDP-CEPH Human Genome Diversity Cell Line Panel (henceforth the "diversity panel") is a collection of 1064 DNA samples from individuals distributed around the world (Cann et al. 2002). The DNA samples in the diversity panel are publicly available for studies of genetic variation, and they now form the basis for a sizeable body of human genetics research (Cavalli-Sforza, 2005).


===== export formats =====
  * LINKAGE-like 
  * [[Arlequin]]
  * to each of them a log file:<code>
#HGDP database V2.0 ; 2008/04/09 12:04:24
#Dump format : Arlequin ; Filename : 20080409_120424_report.log
#Selected populations : Karitiana, Surui, Colombians, Maya, Pima, Cambodians
identifier	dbsnp_id	chrom	physical_pos	MAF_Europe	HetZ_Europe
rs6696404	rs6696404	1	3015090	 0.0268	 0.0537
rs760567	rs760567	1	3023622	 0.1946	 0.2819
rs2993491	rs2993491	1	3034767	 0.2349	 0.2953
rs2817172	rs2817172	1	3064676	 0.3926	 0.4631
</code>


===== How to cite =====
  * Cann, H. M., de Toma, C., Cazes, L., Legrand, M.-F., Morel, V., Piouffre, L., Bodmer, J. et al . (2002) A human genome diversity cell line panel. Science 296 , 261–262.