fstat
Differences
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fstat [2007/12/12 13:31] – heidi | fstat [2010/04/27 15:40] (current) – heidi | ||
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* Windows (95 and above) | * Windows (95 and above) | ||
* Macintosh with PC emulation software | * Macintosh with PC emulation software | ||
+ | |||
===== Data type handled ===== | ===== Data type handled ===== | ||
* Microsatellites | * Microsatellites | ||
- | * multi-allelic markers | + | * Standard (multi-allelic markers) |
+ | |||
+ | |||
+ | |||
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===== Input Files ===== | ===== Input Files ===== | ||
+ | input file of format [[GENEPOP]] can be translated to a FSTAT input file in the file conversion menu | ||
+ | |||
+ | === FSTAT format: === | ||
* named FILENAME.DAT | * named FILENAME.DAT | ||
* total number of individuals in the data set needs to be less than 20’000 | * total number of individuals in the data set needs to be less than 20’000 | ||
Line 97: | Line 105: | ||
</ | </ | ||
- | \\ | + | === multiple regression and partial mantel file: === |
- | * input file of format [[GENEPOP]] or [[FSTAT]] can be translated to a FSTAT input file in the file conversion menu | + | No specific extension is required for this file |
+ | * example: < | ||
+ | | ||
+ | var0 (YANOM.GEN) | ||
+ | var1 (YANOM.ANT) | ||
+ | var2 (YANOM.GEO) | ||
+ | 35.00000 96.00000 9.00000 | ||
+ | 44.00000 147.00000 28.00000 | ||
+ | 38.00000 88.00000 20.00000 | ||
+ | 47.00000 295.00000 152.00000 | ||
+ | 56.00000 318.00000 161.00000 | ||
+ | 59.00000 309.00000 178.00000 | ||
+ | 52.00000 284.00000 149.00000 | ||
+ | 65.00000 339.00000 158.00000 | ||
+ | </ | ||
- | \\ | ||
===== How to cite ===== | ===== How to cite ===== | ||
- | Goudet, J. 2001. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3) | + | Goudet, J. 2001. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available from http:// |
fstat.1197462673.txt.gz · Last modified: 2008/07/22 13:30 (external edit)