Differences

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--- fasta [2007/12/17 15:55] – heidi
+++ fasta [2008/07/22 13:31] (current) – external edit 127.0.0.1
@@ Line 1: / Line 1: @@
 ====== FASTA ======
+**[[http://en.wikipedia.org/wiki/FASTA_format|wikipedia: FASTA format]]**\\
+[[http://www.ncbi.nlm.nih.gov/blast/fasta.shtml|NCBI's FASTA format description]]\\
+\\
 FASTA format is a text-based format for representing either nucleic acid sequences or peptide sequences, in which base pairs or amino acids are represented using single-letter codes. The format also allows for sequence names and comments to precede the sequences.
 ===== format information =====
   * text based
+  * no standard file extension for a text file containing FASTA formatted sequences. FASTA format files often have file extensions like .fa, .mpfa, .fna, .fsa, .fas or .fasta
 ===== Data type handled =====
   * nucleic acid sequences
   * peptide sequences
@@ Line 66: / Line 74: @@
 | NCBI Reference Sequence          | ''ref|accession|locus'' |
 | Local Sequence identifier        | ''lcl|identifier'' |
+//Anm: Die gi-Nummer ist eine Abfolge von Ziffern, die einen Datenbankeintrag des NCBI markiert.//
+\\
 === Sequence representation ===
   * After the header line and comments
@@ Line 137: / Line 146: @@
-===== How to cite =====
+===== converter =====
+[[http://iubio.bio.indiana.edu/soft/molbio/readseq/|Readseq]] for converting sequence formats to FASTA \\
+[[http://www.bugaco.com/bioinf/|Nexus to Fasta converter]]\\
+[[http://gp2fasta.ovh.org/|GenBank to Fasta conventer]]