dnasp
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dnasp [2007/12/12 11:00] – heidi | dnasp [2008/08/14 11:28] (current) – heidi | ||
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====== DnaSP ====== | ====== DnaSP ====== | ||
- | {{dnasplogo1.gif|}}{{dnasplogo.gif}} | + | {{dnasplogo1.gif}}{{dnasplogo.gif}} |
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* DNA | * DNA | ||
* SNP | * SNP | ||
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===== Input Files ===== | ===== Input Files ===== | ||
read or write (export) five types of file formats: | read or write (export) five types of file formats: | ||
- | * MEGA (Kumar et al. 1994) | + | * [[MEGA]] (Kumar et al. 1994) |
* NBRF/PIR (Sidman et al. 1988) | * NBRF/PIR (Sidman et al. 1988) | ||
* [[NEXUS]] | * [[NEXUS]] | ||
- | * FASTA | + | * [[FASTA]] |
* [[PHYLIP]] | * [[PHYLIP]] | ||
* [[Arlequin]] (only write) | * [[Arlequin]] (only write) | ||
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In all cases one or more homologous aligned nucleotide (DNA or RNA) sequences should be included in a text file. The total number of sequences and the sequence length that can be handled by DnaSP mainly depend on the available memory, which can analyze data files with a large number (thousands) of sequences of thousands of nucleotides each.\\ | In all cases one or more homologous aligned nucleotide (DNA or RNA) sequences should be included in a text file. The total number of sequences and the sequence length that can be handled by DnaSP mainly depend on the available memory, which can analyze data files with a large number (thousands) of sequences of thousands of nucleotides each.\\ | ||
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===== How to cite ===== | ===== How to cite ===== | ||
+ | * Rozas, J. and Rozas, R. 1995. DnaSP, DNA sequence polymorphism: | ||
+ | * Rozas, J. and Rozas, R. 1997. DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis. Comput. Applic. Biosci. 13: 307-311. | ||
+ | * Rozas, J. and Rozas, R. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175. | ||
+ | * Rozas, J., Sánchez-DelBarrio, | ||
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dnasp.1197453632.txt.gz · Last modified: 2008/07/22 13:30 (external edit)