dnasp
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dnasp [2007/12/12 10:54] – heidi | dnasp [2008/08/14 11:28] (current) – heidi | ||
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====== DnaSP ====== | ====== DnaSP ====== | ||
- | {{dnasplogo1.gif|}}{{dnasplogo.gif}} | + | {{dnasplogo1.gif}}{{dnasplogo.gif}} |
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* DNA | * DNA | ||
* SNP | * SNP | ||
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===== Input Files ===== | ===== Input Files ===== | ||
read or write (export) five types of file formats: | read or write (export) five types of file formats: | ||
- | * MEGA (Kumar et al. 1994) | + | * [[MEGA]] (Kumar et al. 1994) |
* NBRF/PIR (Sidman et al. 1988) | * NBRF/PIR (Sidman et al. 1988) | ||
* [[NEXUS]] | * [[NEXUS]] | ||
- | * FASTA | + | * [[FASTA]] |
* [[PHYLIP]] | * [[PHYLIP]] | ||
+ | * [[Arlequin]] (only write) | ||
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+ | \\ | ||
+ | In all cases one or more homologous aligned nucleotide (DNA or RNA) sequences should be included in a text file. The total number of sequences and the sequence length that can be handled by DnaSP mainly depend on the available memory, which can analyze data files with a large number (thousands) of sequences of thousands of nucleotides each.\\ | ||
- | In all cases one or more homologous aligned nucleotide (DNA or RNA) sequences should be included in a text file. The total number of sequences and the sequence length that can be handled by DnaSP mainly depend on the available memory, which can analyze data files with a large number (thousands) of sequences of thousands of nucleotides each. The output is displayed in windows with text, tables, grids (the output data are laid out in rows and columns as on a spreadsheet) and graphs. The output can either be sent to the printer (any Windows printer driver) or be saved in a file. | ||
===== How to cite ===== | ===== How to cite ===== | ||
+ | * Rozas, J. and Rozas, R. 1995. DnaSP, DNA sequence polymorphism: | ||
+ | * Rozas, J. and Rozas, R. 1997. DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis. Comput. Applic. Biosci. 13: 307-311. | ||
+ | * Rozas, J. and Rozas, R. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175. | ||
+ | * Rozas, J., Sánchez-DelBarrio, | ||
+ |
dnasp.1197453278.txt.gz · Last modified: 2008/07/22 13:30 (external edit)