dnasp
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====== DnaSP ====== | ====== DnaSP ====== | ||
- | {{dnasplogo.gif}} | + | {{dnasplogo1.gif}}{{dnasplogo.gif}} |
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- | [[http:// | + | **[[http:// |
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===== Program information ===== | ===== Program information ===== | ||
+ | * Windows 95 / 98 / NT / XP | ||
+ | * Macintosh (PowerMac) using SoftWindows or VirtualPC software emulators | ||
+ | |||
===== Data type handled ===== | ===== Data type handled ===== | ||
+ | * DNA | ||
+ | * SNP | ||
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===== Input Files ===== | ===== Input Files ===== | ||
+ | read or write (export) five types of file formats: | ||
+ | * [[MEGA]] (Kumar et al. 1994) | ||
+ | * NBRF/PIR (Sidman et al. 1988) | ||
+ | * [[NEXUS]] | ||
+ | * [[FASTA]] | ||
+ | * [[PHYLIP]] | ||
+ | * [[Arlequin]] (only write) | ||
+ | |||
+ | \\ | ||
+ | In all cases one or more homologous aligned nucleotide (DNA or RNA) sequences should be included in a text file. The total number of sequences and the sequence length that can be handled by DnaSP mainly depend on the available memory, which can analyze data files with a large number (thousands) of sequences of thousands of nucleotides each.\\ | ||
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===== How to cite ===== | ===== How to cite ===== | ||
+ | * Rozas, J. and Rozas, R. 1995. DnaSP, DNA sequence polymorphism: | ||
+ | * Rozas, J. and Rozas, R. 1997. DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis. Comput. Applic. Biosci. 13: 307-311. | ||
+ | * Rozas, J. and Rozas, R. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175. | ||
+ | * Rozas, J., Sánchez-DelBarrio, | ||
+ |
dnasp.1197452338.txt.gz · Last modified: 2008/07/22 13:30 (external edit)