Differences

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--- batwing [2008/06/16 16:19] – heidi
+++ batwing [2008/07/22 13:31] (current) – external edit 127.0.0.1
@@ Line 19: / Line 19: @@
   * SNP
   * haploid data
@@ Line 31: / Line 32: @@
     * coded by an integer value giving the number of tandem repeats at that locus
     * Missing STR data can be specified using −1
+  * If the data are drawn from several distinct populations:
+    * stored in a file locationfile, in the same way as for datafile
+    * rows of the locationfile should correspond to the rows of the datafile
+    * subpopulation codes may be any positive integers
+    * missing location information can be specified using −1
-\\
-**to do  **
-\\
-  * If the data are drawn from several distinct populations the positive integer label specifying the source subpopulation
-is stored in a file locationfile, in the same way as for datafile. Rows of
-the locationfile should correspond to the rows of the datafile. Subpopulation
-codes may be any positive integers. Missing location information can be
-specified using −1; if this is used the total number of subpopulations must be
-assigned to Npopulations in the infile.
-Unique Event Polymorphism (UEP) sites are polymorphic sites at which only
-two alleles are observed and the investigator assumes that a single historical
-mutation event was responsible for the observed polymorphism. These may
-include insertion/deletion polymorphisms, such as an Alu insertion, or singlenucleotide
-polymorphisms (SNP). The number of UEP sites should be assigned
-to infsites (default: 0).
-The input file samplein specifies 10 STR loci, no UEP loci, a sample size
-of 10 haplotypes
+==== example ====
+The input file specifies 10 STR loci, no UEP (SNP) loci, a sample size of 10 haplotypes
+<code>
 3 2 1 7 8 2 3 10 11
 5 4 7 9 1 2 3 4 3
@@ Line 65: / Line 52: @@
 4 2 1 7 9 1 1 11 12
 5 2 2 3 6 6 2 4 2
+</code>